Yann Thoma's Publications

Y. Baleghi Damavandi, K. Mohammadi, A. Upegui, Y. Thoma.

On Feasibility of Adaptive Level Hardware Evolution for Emergent Fault Tolerant Communication

International Journal of Engineering, pages 101-112, 27: 1, 2014

Y. Thoma, A. Dassatti, D. Molla.

FPGA\superscript2: An Open Source Framework for FPGA-GPU PCIe Communication

Reconfigurable Computing and FPGAs (ReConFig), 2013 International Conference on, pages 1-6, IEEE, 2013

A. Fuchs, C. Csajka, Y. Thoma, T. Buclin, N. Widmer.

Benchmarking Therapeutic Drug Monitoring Software: A Review of Available Computer Tools

Clinical Pharmacokinetics, pages 9-22, 52: 1, 2012

Y. Thoma, E. Messerli, M. Starkier, D. Molla, S. Masle and C. Bianchi, O. Gubler, C. Magliocco, P. Crausaz, S. Tâche, D. Prêtre, G. Trolliet.

Math2Mat: from Octave/Matlab to VHDL

Proc. of 2012 NASA/ESA Conference on Adaptive Hardware and Systems (AHS-2012), pages 264-271, 2012, To be published

A. Upegui, Y. Thoma, H. Satizábal, F. Mondada, P. Retornaz and Y. Graf, A. Perez-Uribe, E. Sanchez.

Ubichip, Ubidule, and MarXbot: A Hardware Platform for the Simulation of Complex Systems

In Tempesti, Gianluca, Tyrrell, Andy, Miller, Julian (Eds.), Evolvable Systems: From Biology to Hardware, pages 286-298, Lecture Notes in Computer Science, 6274, Springer Berlin / Heidelberg, 2010, 10.1007/978-3-642-15323-5_25

O. Jorand, A. Perez-Uribe, H. Volken, A. Upegui, Y. Thoma and E. Sanchez, F. Mondada, P. Retornaz.

Noise and bias for free : PERPLEXUS as a material platform for embodied thought-experiments

Proc. of the 2ns Symposium on Computing and Philosophy, pages 28-34, Edinburgh, 2009

M. Peev, C. Pacher, R. Alleaume, C. Barreiro, J. Bouda and W. Boxleitner, T. Debuisschert, E. Diamanti, M. Dianati and J. F. Dynes, S. Fasel, S. Fossier, M. Furst, J. D. Gautier, O. Gay, N. Gisin, P. Grangier, A. Happe, Y. Hasani, M. Hentschel, H. Hubel, G. Humer, T. Langer and M. Legre, R. Lieger, J. Lodewyck, T. Lorunser, N. Lutkenhaus, A. Marhold, T. Matyus, O. Maurhart, L. Monat and S. Nauerth, J. B. Page, A. Poppe, E. Querasser, G. Ribordy, S. Robyr, L. Salvail, A. W. Sharpe, A. J. Shields and D. Stucki, M. Suda, C. Tamas, T. Themel, R. T. Thew and Y. Thoma, A. Treiber, P. Trinkler, R. Tualle-Brouri and F. Vannel, N. Walenta, H. Weier, H. Weinfurter, I. Wimberger, Z. L. Yuan, H. Zbinden, A. Zeilinger.

The SECOQC quantum key distribution network in Vienna

New Journal of Physics, pages 075001, 11: 10.1088/1367-2630/11/7/075001, 2009

D. Stucki, C. Barreiro, S. Fasel, J.-D. Gautier, O. Gay and N. Gisin, R. Thew, Y. Thoma, P. Trinkler, F. Vannel and H. Zbinden.

Continuous high speed coherent one-way quantum key distribution

Optics Express, pages 13326--13334, 17: 16, 2009

O. Brousse, G. Sassatelli, T. Gil, Y. Guillemenet, M. Robert, F. Grize, E. Sanchez, Y. Thoma, A. Upegui, J.-M. Moreno, J. Madrenas.

BAF: A Bio-Inspired Agent Framework for Distributed Pervasive Applications

Proceeding of GEM08, pages 115-121, 2008

O. Brousse, G. Sassatelli, T. Gil, M. Robert, F. Grize and E. Sanchez, A. Upegui, Y. Thoma.

The Perplexus Programming Framework: Combining Bio-inspiration and Agent-Oriented Programming for the Simulation of Large Scale Complex Systems

In G.S. Hornby, L. Sekanina, P.C. Haddow (Eds.), Evolvable Systems: From Biology to Hardware, pages 402-407, LNCS, 5216, Springer Verlag, Berlin, Heidelberg, 2008

D. Stucki, C. Barreiro, S. Fasel, J.D. Gautier, O. Gay and N. Gisin, R. Thew, Y. Thoma, P. Trinkler, F. Vannel and H. Zbinden.

High Speed Coherent One-way Quantum Key Distribution Prototype

arXiv.org, 2008

Y. Thoma, A. Upegui.

UbiManager: A software Tool for Managing Ubichips

In D. Keymeulen, T. Arslan, M. Suess, A. Stoica, A.T. Erdogan and D. Merodio (Eds.), Proceedings of the 3rd NASA/ESA Conference on Adaptive Hardware and Systems, pages 213-219, IEEE Computer Society, 2008

A. Upegui, Y. Thoma, A. Perez-Uribe, E. Sanchez.

Dynamic Routing on the Ubichip: Toward Synaptogenetic Neural Networks

In D. Keymeulen, T. Arslan, M. Suess, A. Stoica, A.T. Erdogan and D. Merodio (Eds.), Proceedings of the 3rd NASA/ESA Conference on Adaptive Hardware and Systems, pages 228-235, IEEE Computer Society, 2008

A. Upegui, A. Perez-Uribe, Y. Thoma, E. Sanchez.

Neural Development on the Ubichip by Means of Dynamic Routing Mechanisms

In G.S. Hornby, L. Sekanina, P.C. Haddow (Eds.), Evolvable Systems: From Biology to Hardware, pages 392-401, LNCS, 5216, Springer Verlag, Berlin, Heidelberg, 2008

A. Upegui, Y. Thoma, E. Sanchez, A. Perez-Uribe, J.M. Moreno, J. Madrenas, Gilles Sassatelli.

The PERPLEXUS bio-inspired hardware platform: A flexible and modular approach

International Journal of Knowledge-Based and Intelligent Engineering Systems (KES), pages 201-212, 12: 3, IOS Press , 2008

W. Barker, D.~M. Halliday, Y. Thoma, E. Sanchez, G. Tempesti and, A.~M Tyrrell.

Fault Tolerance using Dynamic Reconfiguration on the POEtic Tissue

IEEE Transactions on Evolutionary Computation, pages 666-684, 11: 5, 2007

E. Sanchez, A. Perez-Uribe, A. Upegui, Y. Thoma, J.M. Moreno, A. Villa, H. Volken, A. Napieralski, G. Sassatelli and E. Lavarec.

PERPLEXUS: Pervasive Computing Framework for Modeling Complex Virtually-Unbounded Systems

In T. Arslan, A. Stoica, M. Suess, D. Keymeulen, T. Higuchi and R. Zebulum, A.~T. Erdogan (Eds.), AHS 2007 - Proceedings of the 2nd NASA/ESA Conference on Adaptive Hardware and Systems, pages 600-605, IEEE Computer Society, Los Alamitos, CA, USA, 2007

D. Stucki, S. Fasel, N. Gisin, Y. Thoma, H. Zbinden.

Coherent One-way Quantum Key Distribution

In I. Prochazka, A.~L. Migdall, A. Pauchard, M. Dusek, M.~S. Hillery, W.~P. Schleich (Eds.), Proceedings of SPIE, 6583, 2007

Y. Thoma, A. Upegui, A. Perez-Uribe, E. Sanchez.

Self-Replication Mechanism by Means of Self-Reconfiguration

In M. Platzner, K.-E. Grosspietsch, C. Hochberger, A. Koch (Eds.), 20th International Conference on Architecture of Computing Systems 2007 (ARCS '07), Workshop proceedings, pages 105-112, VDE Verlag, 2007

A. Upegui, Y. Thoma, E. Sanchez, A. Perez-Uribe, J.M. Moreno, J. Madrenas.

The Perplexus Bio-inspired Reconfigurable Circuit

In T. Arslan, A. Stoica, M. Suess, D. Keymeulen, T. Higuchi and R. Zebulum, A.~T. Erdogan (Eds.), Proceedings of the 2nd NASA/ESA Conference on Adaptive Hardware and Systems, pages 600-605, IEEE Computer Society, Los Alamitos, CA, USA, 2007

J.-M. Moreno, Y. Thoma, E. Sanchez, J. Eriksson, J. Iglesias and A. Villa.

The POEtic Electronic Tissue and its Role in the Emulation of Large-Scale Biologically Inspired Spiking Neural Networks Models

ComPlexus, pages 32-47, 3, 2006

J. Rossier, Y. Thoma, P.-A. Mudry, G. Tempesti.

MOVE Processors That Self-replicate and Differentiate

In A.J. Ijspeert, others (Eds.), Proc. Biologically Inspired Approaches to Advanced Information Technology (BioADIT 2006), pages 160-175, LNCS 3853, Springer-Verlag, Berlin Heidelberg, 2006

J.M. Moreno, Y. Thoma, E. Sanchez.

POEtic: A Prototyping Platform for Bio-inspired Hardware

In J.M. Moreno, J. Madrenas, J. Cosp (Eds.), Evolvable Systems: From Biology to Hardware (ICES 2005), pages 177-187, LNCS, 3637, Springer-Verlag, Berlin Heidelberg, 2005

Y. Thoma, E. Sanchez.

An Adaptive FPGA and its Distributed Routing

Proc. ReCoSoc '05 Reconfigurable Communication-centric SoC, pages 43-51, Montpellier - France, 2005

Y. Thoma.

Tissu Numérique Cellulaire à Routage et Configuration Dynamiques

J.-M. Moreno, Y. Thoma, E. Sanchez, O. Torres, G. Tempesti.

Hardware Realization of a Bio-inspired POEtic Tissue

In R. S. Zebulum, D. Galtney, G. Hornby, D. Keymeulen, J. Lohn, A. Stoica (Eds.), Proc. 2004 NASA/DoD Conference on Evolvable Hardware, pages 237-244, IEEE Computer Society, Los Alamitos, California, 2004

D. Roggen, Y. Thoma, E. Sanchez.

An Evolving and Developing Cellular Electronic Circuit

In J. Pollack, others (Eds.), Proc. Ninth International Conference on the Simulation and Synthesis of Living Systems (ALIFE9), pages 33-38, The MIT Press, Cambridge, Massachusetts, USA, 2004

Y. Thoma, G. Tempesti, E. Sanchez, J.-M. Moreno Arostegui.

POEtic: An Electronic Tissue for Bio-Inspired Cellular Applications

BioSystems, pages 191-200, 74: 1-3, 2004

Y. Thoma, D. Roggen, E. Sanchez, J.-M. Moreno.

Prototyping with a Bio-inspired Reconfigurable Chip

In F. Titsworth (Eds.), Proc. 15th IEEE International Workshop on Rapid System Prototyping (RSP 2004), pages 239-246, IEEE Computer Society, Los Alamitos, California, 2004

Y. Thoma, E. Sanchez.

A Reconfigurable Chip for Evolvable Hardware

In K. Deb, others (Eds.), Proc. Genetic and Evolutionary Computation COnference (GECCO 2004), Part I, pages 816-827, LNCS 3102, Springer Verlag, Berlin, Heidelberg, 2004

D. Roggen, S. Hofmann, Y. Thoma, D. Floreano.

Hardware Spiking Neural Network with Run-Time Reconfigurable Connectivity in an Autonomous Robot

In J. Lohn, R. Zebulum, J. Steincamp, D. Keymeulen, A. Stoica and M. I. Ferguson (Eds.), Proc. 2003 NASA/DoD Conference on Evolvable Hardware, pages 189-198, IEEE Computer Society, Los Alamitos, California, 2003

G. Tempesti, D. Mange, E. Petraglio, A. Stauffer, Y. Thoma.

Developmental Processes in Silicon: An Engineering Perspective

In J. Lohn, R. Zebulum, J. Steincamp, D. Keymeulen, A. Stoica and M. I. Ferguson (Eds.), Proc. 2003 NASA/DoD Conference on Evolvable Hardware, pages 255-264, IEEE Computer Society, Los Alamitos, California, 2003

G. Tempesti, D. Roggen, E. Sanchez, Y. Thoma, R. Canham and A.M. Tyrell.

Ontogenetic Development and Fault Tolerance in the POEtic Tissue

In A.M. Tyrrell, P.C. Haddow, J. Torresen (Eds.), Evolvable Systems: From Biology to Hardware. Proc. 5th Int. Conf. on Evolvable Hardware (ICES 2003), pages 141-152, LNCS 2606, Springer Verlag, Berlin, Heidelberg, 2003

Y. Thoma, E. Sanchez, J.-M. Moreno Arostegui, G. Tempesti.

A Dynamic Routing Algorithm for a Bio-Inspired Reconfigurable Circuit

In P. Y. K. Cheung, others (Eds.), Proc. of the 13th International Conference on Field Programmable Logic and Applications (FPL'03), pages 681-690, LNCS, 2778, Springer Verlag, Berlin, Heidelberg, 2003

Y. Thoma, E. Sanchez, J.-M. Moreno Arostegui, G. Tempesti.

Un Sistema de Enrutamiento Dinàmico para un Circuito Reconfigurable Bio-Inspirado

In E. B. Scalvinoni, F. G. Arribas, S. Lopez-Buedo, G. S. Capristo (Eds.), Computacion Reconfigurable \& FPGAs, pages 27-37, Universided Autonoma de Madrid, 2003

G. Tempesti, D. Roggen, E. Sanchez, Y. Thoma, R. Canham and A. Tyrrell, J.-M. Moreno.

A POEtic Architecture for Bio-Inspired Systems

In R.K. Standish, M.A. Bedau, H.A. Abbass (Eds.), Proc. 8th Int. Conf. of Artificial Life VIII, pages 111-115, MIT Press, Cambridge, Massachusetts, 2002

Y. Thoma, E. Sanchez.

CoDeNios: A Function Level Co-Design Tool

Workshop on Computer Architecture Education, WCAE 2002, Workshop Proceedings, pages 73-78, Anchorage, Alaska, 2002